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Complex of Rac2 and PLCg2 spPH Domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UPQ PDB ENTRY 1UPQ AND 2OVJ experimental model PDB 2OVJ PDB ENTRY 1UPQ AND 2OVJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 277 RAC2(2-177)GTPGS-PLCSPPH(Y495F) COMPLEX WAS CRYSTALLIZED USING A PROTEIN CONCENTRATION OF 25 MG/ML WITH PRECIPITANT (18% PEG1500, 10% GLYCEROL, 100MM SPG PH9) BY MICRO-SEEDING AT A CONSTANT TEMPERATURE OF 4C
Crystal Properties Matthews coefficient Solvent content 2.65 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.57 α = 90 b = 84.459 β = 112.21 c = 74.196 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 70 86.9 0.06 12.8 3 29046
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 52.7 0.5 1.9 2.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1UPQ AND 2OVJ 2.3 69.406 1.1 54867 2769 83.51 0.237 0.234 0.2209 0.2944 0.2791 64.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -9.3864 -1.4491 17.0954 -7.709
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.736 f_angle_d 1.406 f_chiral_restr 0.095 f_bond_d 0.01 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4277 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 66
Software Software Software Name Purpose PHENIX refinement MOSFLM data reduction SCALA data scaling PHASER phasing