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STRUCTURAL INSIGHT INTO THE INTERACTION BETWEEN ARCHAEAL ESCRT-III AND AAA-ATPASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V6Y PDB ENTRY 2V6Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 15% PEG4K, 0.1M TRIS(PH7.5)
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.855 α = 90 b = 49.855 β = 90 c = 107.672 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 49.88 99.5 0.14 16.2 7.2 12626 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.5 0.52 3.7 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2V6Y 2.2 49.88 12626 679 99.5 0.227 0.225 0.226 0.268 0.2663 RANDOM 16.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 0.53 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.395 r_dihedral_angle_4_deg 16.02 r_dihedral_angle_3_deg 14.474 r_dihedral_angle_1_deg 4.75 r_scangle_it 2.107 r_scbond_it 1.252 r_angle_refined_deg 1.043 r_mcangle_it 0.706 r_mcbond_it 0.508 r_nbtor_refined 0.291
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.395 r_dihedral_angle_4_deg 16.02 r_dihedral_angle_3_deg 14.474 r_dihedral_angle_1_deg 4.75 r_scangle_it 2.107 r_scbond_it 1.252 r_angle_refined_deg 1.043 r_mcangle_it 0.706 r_mcbond_it 0.508 r_nbtor_refined 0.291 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.137 r_symmetry_hbond_refined 0.092 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1370 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing