2W0P

Crystal structure of the filamin A repeat 21 complexed with the migfilin peptide


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BRQPDB ENTRY 2BRQ, CHAIN A

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
11.7M (NH4)2SO4, 5% 2-PROPANOL
Crystal Properties
Matthews coefficientSolvent content
2.5150.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.89α = 90
b = 68.48β = 90
c = 85.22γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4TOROIDAL MIRROR2008-07-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.932.4899.90.1313.52.5417625
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9597.70.742.352.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BRQ, CHAIN A1.932.481673089599.90.210.2090.239RANDOM24.88
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.010.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.088
r_dihedral_angle_4_deg16.021
r_dihedral_angle_3_deg14.186
r_dihedral_angle_1_deg6.14
r_scangle_it5.539
r_scbond_it3.447
r_mcangle_it2.335
r_angle_refined_deg1.789
r_mcbond_it1.437
r_symmetry_hbond_refined0.311
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.088
r_dihedral_angle_4_deg16.021
r_dihedral_angle_3_deg14.186
r_dihedral_angle_1_deg6.14
r_scangle_it5.539
r_scbond_it3.447
r_mcangle_it2.335
r_angle_refined_deg1.789
r_mcbond_it1.437
r_symmetry_hbond_refined0.311
r_nbtor_refined0.309
r_nbd_refined0.239
r_symmetry_vdw_refined0.212
r_chiral_restr0.143
r_xyhbond_nbd_refined0.115
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1430
Nucleic Acid Atoms
Solvent Atoms70
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing