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Crystal structure of Rv0802c from Mycobacterium tuberculosis in an unliganded form.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.25 PROTEIN AT 7MG/ML IN 10 MM TEA PH 7.8, 100 MM AMMONIUM SULFATE, 3% GLYCEROL, 1 MM EDTA, 2 MM DTT CRYSTALLIZED IN 150 MM NACITRATE PH 5.25
Crystal Properties Matthews coefficient Solvent content 2.79 55.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.705 α = 90 b = 111.458 β = 90 c = 135.238 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU IMAGE PLATE OSMIC BLUE CONFOCAL 2003-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 86 95.4 0.05 22.3 5.5 69624
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 79.4 0.18 4.8 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2 86.07 66073 3524 95.5 0.166 0.164 0.1654 0.205 0.2074 RANDOM 19.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 1.17 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.824 r_dihedral_angle_4_deg 18.233 r_dihedral_angle_3_deg 13.061 r_dihedral_angle_1_deg 5.571 r_scangle_it 3.798 r_scbond_it 2.414 r_angle_refined_deg 1.546 r_mcangle_it 1.379 r_mcbond_it 0.841 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.824 r_dihedral_angle_4_deg 18.233 r_dihedral_angle_3_deg 13.061 r_dihedral_angle_1_deg 5.571 r_scangle_it 3.798 r_scbond_it 2.414 r_angle_refined_deg 1.546 r_mcangle_it 1.379 r_mcbond_it 0.841 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.219 r_nbd_refined 0.2 r_symmetry_hbond_refined 0.145 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.105 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6149 Nucleic Acid Atoms Solvent Atoms 581 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing