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Complex of Amycolatopsis orientalis exo-chitosanase CsxA D469A with PNP-beta-D-glucosamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 mother liquor containing 18% polyethylene glycol 2000 monomethylether, 20 mM CdSO4, and 100 mM Tris-HCl, pH 7.5,
Crystal Properties Matthews coefficient Solvent content 2.48 50.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.6 α = 90 b = 121.96 β = 90.42 c = 91.81 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99.7 0.12 9.2 3.4 105174 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.1 40 105174 5547 99.7 0.174 0.172 0.1757 0.207 0.2099 RANDOM 12.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.09 0.44 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.323 r_dihedral_angle_4_deg 18.878 r_dihedral_angle_3_deg 14.865 r_dihedral_angle_1_deg 9.986 r_scangle_it 3.132 r_scbond_it 2.215 r_angle_refined_deg 1.696 r_mcangle_it 1.264 r_mcbond_it 0.812 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.323 r_dihedral_angle_4_deg 18.878 r_dihedral_angle_3_deg 14.865 r_dihedral_angle_1_deg 9.986 r_scangle_it 3.132 r_scbond_it 2.215 r_angle_refined_deg 1.696 r_mcangle_it 1.264 r_mcbond_it 0.812 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.244 r_nbd_refined 0.205 r_symmetry_hbond_refined 0.134 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.129 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13012 Nucleic Acid Atoms Solvent Atoms 879 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement