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FERREDOXIN-NADP REDUCTASE (MUTATIONS: T155G, A160T, L263P AND Y303S) COMPLEXED WITH NAD BY COCRYSTALLIZATION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QUE PDB ENTRY 1QUE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 20% PEG 6000 0.1M ACNA, PH 5.5 B-OCTYL GLYCOSIDE AT 2%(W/V) 10-60 MM NAD
Crystal Properties Matthews coefficient Solvent content 2.92 57.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.888 α = 90 b = 86.888 β = 90 c = 96.372 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD BRUKER-NONIUS 2007-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER-NONIUS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 43.44 100 0.12 11.4 8.4 31094 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 2 99.7 0.47 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QUE 1.93 20 28836 2185 100 0.17 0.169 0.1787 0.195 0.2066 RANDOM 11.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.05 0.11 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.126 r_scangle_it 2.158 r_scbond_it 1.226 r_angle_refined_deg 1.049 r_mcangle_it 1.005 r_angle_other_deg 0.714 r_mcbond_it 0.531 r_symmetry_vdw_other 0.258 r_nbd_other 0.231 r_nbd_refined 0.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.126 r_scangle_it 2.158 r_scbond_it 1.226 r_angle_refined_deg 1.049 r_mcangle_it 1.005 r_angle_other_deg 0.714 r_mcbond_it 0.531 r_symmetry_vdw_other 0.258 r_nbd_other 0.231 r_nbd_refined 0.177 r_xyhbond_nbd_refined 0.097 r_symmetry_hbond_refined 0.087 r_nbtor_other 0.076 r_chiral_restr 0.062 r_symmetry_vdw_refined 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2330 Nucleic Acid Atoms Solvent Atoms 429 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing