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Structure of human calcium calmodulin dependent protein kinase type II alpha (CAMK2A) in complex with Indirubin E804
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V7O PDB ENTRY 2V7O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 12% PEG6000, 0.1M TRIS PH8.5
Crystal Properties Matthews coefficient Solvent content 3.98 69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.244 α = 90 b = 113.621 β = 90 c = 131.868 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 49.88 100 0.12 11.1 4.9 51687 37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.78 2.3 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2V7O 2.3 43.15 49347 2269 100 0.165 0.163 0.1735 0.203 0.2092 RANDOM 21.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.58 -0.76 -2.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.262 r_dihedral_angle_4_deg 20.773 r_dihedral_angle_3_deg 14.716 r_scangle_it 8.025 r_dihedral_angle_1_deg 6.205 r_scbond_it 5.907 r_mcangle_it 3.535 r_mcbond_it 2.177 r_angle_refined_deg 1.569 r_angle_other_deg 0.943
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.262 r_dihedral_angle_4_deg 20.773 r_dihedral_angle_3_deg 14.716 r_scangle_it 8.025 r_dihedral_angle_1_deg 6.205 r_scbond_it 5.907 r_mcangle_it 3.535 r_mcbond_it 2.177 r_angle_refined_deg 1.569 r_angle_other_deg 0.943 r_symmetry_vdw_other 0.29 r_nbd_other 0.236 r_nbd_refined 0.196 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.143 r_symmetry_hbond_refined 0.123 r_nbtor_other 0.111 r_chiral_restr 0.094 r_symmetry_vdw_refined 0.073 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4654 Nucleic Acid Atoms Solvent Atoms 311 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing