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Type IV secretion system effector protein BepA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.7 17 MG/ML PROTEIN IN 20 MM TRIS-HCL (PH 8.0), 500 MM NACL AND 2 MM BETA-MERCAPTOETHANOL MIXED WITH 22 % POLYETHYLENE GLYCOL 4000, 0.1 M TRIS PH 8.7, 5 MM NICL2 IN A 1:1 (V:V) RATIO
Crystal Properties Matthews coefficient Solvent content 2.9 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.336 α = 90 b = 84.61 β = 90 c = 126.68 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 85.13 91.6 0.1 6.25 5.56 18356
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 60.9 0.32 2.37 2.58
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.8 30 17372 937 91.6 0.219 0.216 0.223 0.276 0.2806 RANDOM 47.03
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.39 -0.82 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.97 r_dihedral_angle_3_deg 17.036 r_dihedral_angle_4_deg 15.988 r_dihedral_angle_1_deg 5.205 r_scangle_it 3.827 r_scbond_it 2.641 r_mcangle_it 1.437 r_mcbond_it 1.216 r_angle_refined_deg 1.019 r_angle_other_deg 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.97 r_dihedral_angle_3_deg 17.036 r_dihedral_angle_4_deg 15.988 r_dihedral_angle_1_deg 5.205 r_scangle_it 3.827 r_scbond_it 2.641 r_mcangle_it 1.437 r_mcbond_it 1.216 r_angle_refined_deg 1.019 r_angle_other_deg 0.826 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.212 r_nbtor_refined 0.179 r_nbd_other 0.172 r_symmetry_vdw_other 0.159 r_xyhbond_nbd_refined 0.149 r_symmetry_vdw_refined 0.137 r_nbtor_other 0.087 r_chiral_restr 0.053 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4668 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 6
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELX phasing SHARP phasing REFMAC refinement