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The structure of MAO-N-D5, a variant of monoamine oxidase from Aspergillus niger.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SELENOMET STRUCTURE OF MONOAMINE OXIDASE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 10% PEG 3350, 0.2M PROLINE, 0.1M HEPES PH7.5
Crystal Properties Matthews coefficient Solvent content 3.09 60.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.419 α = 90 b = 107.419 β = 90 c = 235.4 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TORODIAL FOCUSING MIRROR 2007-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 30 99.8 0.09 28.2 17.2 66613
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 98.5 0.66 1.8 8.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SELENOMET STRUCTURE OF MONOAMINE OXIDASE 1.85 97.59 111736 5893 99.7 0.182 0.181 0.1814 0.205 0.2045 RANDOM 25.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.59 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.058 r_dihedral_angle_4_deg 16.696 r_dihedral_angle_3_deg 11.762 r_dihedral_angle_1_deg 6.607 r_scangle_it 2.088 r_scbond_it 1.322 r_angle_refined_deg 1.276 r_mcangle_it 0.812 r_mcbond_it 0.424 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.058 r_dihedral_angle_4_deg 16.696 r_dihedral_angle_3_deg 11.762 r_dihedral_angle_1_deg 6.607 r_scangle_it 2.088 r_scbond_it 1.322 r_angle_refined_deg 1.276 r_mcangle_it 0.812 r_mcbond_it 0.424 r_chiral_restr 0.103 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7564 Nucleic Acid Atoms Solvent Atoms 705 Heterogen Atoms 146
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing