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IrisFP fluorescent protein in its red form, cis conformation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZUX PDB ENTRY 1ZUX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.4 293 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, BICINE, PH 8.4, VAPOR DIFFUSION, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.81 56.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.67 α = 90 b = 96.62 β = 90 c = 140.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD QUANTUM 2008-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 45.7 99.1 0.07 15.37 4 78543
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99 0.44 3.44 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ZUX 2 45.69 74614 3928 100 0.18853 0.18626 0.1878 0.2324 0.2326 RANDOM 30.429
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.794 r_dihedral_angle_3_deg 12.396 r_dihedral_angle_4_deg 11.126 r_dihedral_angle_1_deg 5.866 r_scangle_it 1.471 r_angle_refined_deg 1.357 r_scbond_it 0.95 r_mcangle_it 0.666 r_mcbond_it 0.586 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.794 r_dihedral_angle_3_deg 12.396 r_dihedral_angle_4_deg 11.126 r_dihedral_angle_1_deg 5.866 r_scangle_it 1.471 r_angle_refined_deg 1.357 r_scbond_it 0.95 r_mcangle_it 0.666 r_mcbond_it 0.586 r_nbtor_refined 0.298 r_nbd_refined 0.177 r_symmetry_hbond_refined 0.166 r_symmetry_vdw_refined 0.118 r_xyhbond_nbd_refined 0.104 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7113 Nucleic Acid Atoms Solvent Atoms 967 Heterogen Atoms 91
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing