☰ Navigation Tabs
Crystal structure of NADP-bound NmrA-AreA zinc finger complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K6J PDB ENTRIES 1K6J AND 4GAT experimental model PDB 4GAT PDB ENTRIES 1K6J AND 4GAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.4 0.2M LI2SO4, 0.1M BIS-TRIS PH 6.4, 15% - 17% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.1 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 231.73 α = 90 b = 231.73 β = 90 c = 223.45 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30 100 0.14 11.4 8.4 110086 -1 68.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 100 0.86 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1K6J AND 4GAT 2.8 29.86 110086 5547 99.9 0.232 0.232 0.2322 0.287 0.2872 RANDOM 49.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 0.98 -1.97
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23 c_scangle_it 11.07 c_scbond_it 8.52 c_mcangle_it 7.22 c_mcbond_it 4.86 c_angle_deg 1.4 c_improper_angle_d 0.99 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23 c_scangle_it 11.07 c_scbond_it 8.52 c_mcangle_it 7.22 c_mcbond_it 4.86 c_angle_deg 1.4 c_improper_angle_d 0.99 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22882 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms 392
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing