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PA-IIL lectin from Pseudomonas aeruginosa complexed with Fucose- derived glycomimetics
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UZV PDB ENTRY 1UZV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 TRIS HCL 0.1M PH8.5, 1.75 M AMMNONIUM SULFATE(THE PA-IIL/GLYCOMIMETIC COMPLEX WAS OBTAINED BY SOAKING METHOD FROM FUCOSE-CONTAINING CRYSTAL)
Crystal Properties Matthews coefficient Solvent content 2.22 44.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.555 α = 90 b = 72.668 β = 94.42 c = 54.725 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 300 CCD ADSC CCD TOROIDAL MIRROR 2006-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 27.28 99.4 0.16 18.6 3.7 100063
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 99.5 0.11 9.5 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UZV 1.3 54.55 95040 4995 99.4 0.133 0.132 0.153 0.1663 RANDOM 9.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.03 0.07 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.608 r_dihedral_angle_4_deg 17.371 r_dihedral_angle_3_deg 10.562 r_dihedral_angle_1_deg 6.879 r_scangle_it 2.393 r_scbond_it 1.734 r_angle_refined_deg 1.559 r_mcangle_it 1.221 r_mcbond_it 0.754 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.608 r_dihedral_angle_4_deg 17.371 r_dihedral_angle_3_deg 10.562 r_dihedral_angle_1_deg 6.879 r_scangle_it 2.393 r_scbond_it 1.734 r_angle_refined_deg 1.559 r_mcangle_it 1.221 r_mcbond_it 0.754 r_nbtor_refined 0.299 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.156 r_symmetry_hbond_refined 0.132 r_xyhbond_nbd_refined 0.11 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3308 Nucleic Acid Atoms Solvent Atoms 733 Heterogen Atoms 89
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing