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PhaZ7 depolymerase from Paucimonas lemoignei
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS MICRODIALYSIS, PH 10.5, NACL 150 MM
Crystal Properties Matthews coefficient Solvent content 2.2 43.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 176.383 α = 90 b = 46.38 β = 99.78 c = 85.779 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 99 99.7 0.06 30.1 15 53749 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 94 0.22 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.9 87.04 51068 2609 99.3 0.145 0.142 0.188 0.1442 RANDOM 18.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 -0.2 -0.8 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.737 r_dihedral_angle_4_deg 20.355 r_dihedral_angle_3_deg 11.423 r_dihedral_angle_1_deg 5.927 r_scangle_it 2.068 r_scbond_it 1.666 r_angle_refined_deg 1.227 r_mcangle_it 1.012 r_mcbond_it 0.616 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.737 r_dihedral_angle_4_deg 20.355 r_dihedral_angle_3_deg 11.423 r_dihedral_angle_1_deg 5.927 r_scangle_it 2.068 r_scbond_it 1.666 r_angle_refined_deg 1.227 r_mcangle_it 1.012 r_mcbond_it 0.616 r_nbtor_refined 0.311 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5058 Nucleic Acid Atoms Solvent Atoms 1001 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement SHARP phasing