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Crystal Structure of a Translation Initiation Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QDE PDB ENTRIES 1QDE, 1FUK, 1HU3 experimental model PDB 1FUK PDB ENTRIES 1QDE, 1FUK, 1HU3 experimental model PDB 1HU3 PDB ENTRIES 1QDE, 1FUK, 1HU3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.2 M TARTRATE, 20% PEG3350, PH 7.2
Crystal Properties Matthews coefficient Solvent content 3 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.26 α = 91.7 b = 69.8 β = 102.01 c = 101.97 γ = 115.3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRROR 2006-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 93 0.03 14.6 1.8 48104 -3 37.35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.75 91.6 0.19 3.5 1.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 1QDE, 1FUK, 1HU3 2.6 48.012 2 48580 1314 94.18 0.2154 0.2142 0.2122 0.2601 0.2531 31.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.6018 -8.3964 -10.9456 -9.977 -13.8083 1.2734
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.395 f_angle_d 1.088 f_chiral_restr 0.078 f_bond_d 0.008 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9572 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 46
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling PHASER phasing