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crystal structure of CHIR-AB1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VDG PDB ENTRY 1VDG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 2M AMMONIUM SULFATE, pH 8
Crystal Properties Matthews coefficient Solvent content 2.41 48.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.695 α = 90 b = 63.695 β = 90 c = 55.453 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS VII M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 27.7 95.9 0.04 41.9 3.8 10932 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.89 93.9 0.43 4.3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1VDG 1.82 27.62 10932 599 95.9 0.21 0.207 0.2054 0.247 0.242 RANDOM 29.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.499 r_dihedral_angle_3_deg 14.383 r_dihedral_angle_4_deg 13.523 r_dihedral_angle_1_deg 7.379 r_scangle_it 3.684 r_scbond_it 2.473 r_mcangle_it 1.947 r_angle_refined_deg 1.868 r_mcbond_it 1.176 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.499 r_dihedral_angle_3_deg 14.383 r_dihedral_angle_4_deg 13.523 r_dihedral_angle_1_deg 7.379 r_scangle_it 3.684 r_scbond_it 2.473 r_mcangle_it 1.947 r_angle_refined_deg 1.868 r_mcbond_it 1.176 r_nbtor_refined 0.312 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.207 r_symmetry_vdw_refined 0.161 r_chiral_restr 0.141 r_xyhbond_nbd_refined 0.139 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 732 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms 39
Software Software Software Name Purpose PHASER phasing AMoRE phasing REFMAC refinement