☰ Navigation Tabs
Crystal structure of PorB from Corynebacterium glutamicum (crystal form II)
Crystallization Crystal Properties Matthews coefficient Solvent content 3.58 65.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.457 α = 90 b = 81.457 β = 90 c = 163.346 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS SLS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.89 70.53 99.2 0.08 28.8 20.3 7663 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.89 70.53 7163 498 99.2 0.247 0.247 0.2469 0.256 0.2659 RANDOM 98.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.08 -0.17 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.314 r_dihedral_angle_3_deg 17.066 r_dihedral_angle_4_deg 10.138 r_dihedral_angle_1_deg 3.856 r_scangle_it 1.641 r_scbond_it 0.991 r_angle_refined_deg 0.945 r_mcangle_it 0.792 r_mcbond_it 0.457 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.314 r_dihedral_angle_3_deg 17.066 r_dihedral_angle_4_deg 10.138 r_dihedral_angle_1_deg 3.856 r_scangle_it 1.641 r_scbond_it 0.991 r_angle_refined_deg 0.945 r_mcangle_it 0.792 r_mcbond_it 0.457 r_nbtor_refined 0.297 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.192 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.135 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1114 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement