☰ Navigation Tabs
High resolution structure of the periplasmic binding protein TeaA from TeaABC TRAP transporter of Halomonas elongata in complex with hydroxyectoine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 100 MM HEPES PH 7.5, 40 MM MGCL2, 35 % PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.2 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.6 α = 80.8 b = 52.1 β = 85.7 c = 63.7 γ = 78
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 96.2 0.01 8.8 3.8 53752 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 94 0.08 2.3 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.8 19.82 51005 2722 96.3 0.182 0.179 0.1879 0.225 0.2338 RANDOM 13.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.09 -0.03 -0.04 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.044 r_dihedral_angle_4_deg 14.68 r_dihedral_angle_3_deg 13.878 r_dihedral_angle_1_deg 6.186 r_scangle_it 4.442 r_scbond_it 3.117 r_mcangle_it 2.631 r_angle_other_deg 1.854 r_mcbond_it 1.667 r_angle_refined_deg 1.411
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.044 r_dihedral_angle_4_deg 14.68 r_dihedral_angle_3_deg 13.878 r_dihedral_angle_1_deg 6.186 r_scangle_it 4.442 r_scbond_it 3.117 r_mcangle_it 2.631 r_angle_other_deg 1.854 r_mcbond_it 1.667 r_angle_refined_deg 1.411 r_mcbond_other 0.457 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4935 Nucleic Acid Atoms Solvent Atoms 303 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling ARP/wARP phasing