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Structure of Mycobacterium tuberculosis Rv1207
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EYE PDB ENTRY 1EYE
Crystallization Crystal Properties Matthews coefficient Solvent content 4.13 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.727 α = 90 b = 80.727 β = 90 c = 215.938 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.64 107 99.3 0.07 8.5 3.2 24807
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.64 2.8 99.2 0.45 1.6 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EYE 2.64 19.84 23291 1231 100 0.226 0.223 0.2165 0.268 0.2212 RANDOM 39.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.21 0.42 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.674 r_dihedral_angle_4_deg 18.316 r_dihedral_angle_3_deg 18.269 r_dihedral_angle_1_deg 5.299 r_scangle_it 1.374 r_angle_refined_deg 1.138 r_scbond_it 0.845 r_mcangle_it 0.63 r_mcbond_it 0.353 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.674 r_dihedral_angle_4_deg 18.316 r_dihedral_angle_3_deg 18.269 r_dihedral_angle_1_deg 5.299 r_scangle_it 1.374 r_angle_refined_deg 1.138 r_scbond_it 0.845 r_mcangle_it 0.63 r_mcbond_it 0.353 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.246 r_symmetry_hbond_refined 0.215 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3433 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement SCALA data scaling MOLREP phasing