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Apo FutA2 from Synechocystis PCC6803
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q35 PDB ENTRY 1Q35
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 0.5M AMMONIUM SULPHATE, 1M LITHIUM SULPHATE, 0.1M TRI-SODIUM CITRATE PH 5.6
Crystal Properties Matthews coefficient Solvent content 2.01 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.08 α = 90 b = 100.134 β = 90 c = 66.523 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH RH COATED COLLIMATING MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 44.4 100 0.06 18.4 5.6 67656
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.28 4.5 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Q35 1.7 19.54 64137 3385 100 0.165 0.163 0.1619 0.201 0.1997 RANDOM 15.57
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.814 r_dihedral_angle_4_deg 13.607 r_dihedral_angle_3_deg 12.293 r_dihedral_angle_1_deg 5.733 r_scangle_it 3.552 r_scbond_it 2.403 r_angle_refined_deg 1.528 r_mcangle_it 1.474 r_mcbond_it 0.937 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.814 r_dihedral_angle_4_deg 13.607 r_dihedral_angle_3_deg 12.293 r_dihedral_angle_1_deg 5.733 r_scangle_it 3.552 r_scbond_it 2.403 r_angle_refined_deg 1.528 r_mcangle_it 1.474 r_mcbond_it 0.937 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.212 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.121 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4873 Nucleic Acid Atoms Solvent Atoms 799 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing