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Ternary complex of M. tuberculosis Rv2780 with NAD and pyruvate
Crystallization Crystal Properties Matthews coefficient Solvent content 3.14 60.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.993 α = 90 b = 88.993 β = 90 c = 373.855 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MARRESEARCH VARIMAX OPTICS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 41.92 98 0.07 30.3 7 46674 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 99.2 0.24 7.9 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 377.96 44315 2358 97.86 0.18886 0.18665 0.1863 0.22998 0.2281 RANDOM 30.095
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.612 r_dihedral_angle_3_deg 20.9 r_dihedral_angle_4_deg 18.464 r_dihedral_angle_1_deg 7.116 r_scangle_it 3.247 r_scbond_it 1.963 r_angle_refined_deg 1.835 r_mcangle_it 1.246 r_mcbond_it 0.724 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.612 r_dihedral_angle_3_deg 20.9 r_dihedral_angle_4_deg 18.464 r_dihedral_angle_1_deg 7.116 r_scangle_it 3.247 r_scbond_it 1.963 r_angle_refined_deg 1.835 r_mcangle_it 1.246 r_mcbond_it 0.724 r_nbtor_refined 0.315 r_symmetry_hbond_refined 0.252 r_nbd_refined 0.242 r_symmetry_vdw_refined 0.202 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.129 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8103 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms 150
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling