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Structure of mouse A1 bound to the Bmf BH3-domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VOF PDB ENTRY 2VOF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 18% PEG 2000, 0.88 M LICL, 0.1 M CITRIC ACID, KOH (PH 4.35)
Crystal Properties Matthews coefficient Solvent content 1.72 29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.654 α = 90 b = 68.05 β = 90 c = 32.136 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU IMAGE PLATE M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 23.81 99.9 0.06 19.1 4 12089 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.8 0.36 2.9 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2VOF 1.9 23.81 11512 577 99.9 0.193 0.191 0.2015 0.231 0.2508 RANDOM 26.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 -0.38 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.816 r_dihedral_angle_3_deg 14.537 r_dihedral_angle_4_deg 13.617 r_dihedral_angle_1_deg 4.831 r_scangle_it 3.558 r_scbond_it 2.443 r_mcangle_it 1.402 r_angle_refined_deg 1.256 r_mcbond_it 1.071 r_angle_other_deg 0.862
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.816 r_dihedral_angle_3_deg 14.537 r_dihedral_angle_4_deg 13.617 r_dihedral_angle_1_deg 4.831 r_scangle_it 3.558 r_scbond_it 2.443 r_mcangle_it 1.402 r_angle_refined_deg 1.256 r_mcbond_it 1.071 r_angle_other_deg 0.862 r_nbd_refined 0.228 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.172 r_symmetry_vdw_other 0.164 r_nbd_other 0.161 r_symmetry_hbond_refined 0.137 r_chiral_restr 0.089 r_nbtor_other 0.08 r_symmetry_vdw_refined 0.072 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1343 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing