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Crystal structure of Rv2780 from M. tuberculosis H37Rv
Crystallization Crystal Properties Matthews coefficient Solvent content 2.97 58.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.891 α = 90 b = 127.078 β = 115.04 c = 135.954 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MARRESEARCH VARIMAX OPTICS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 25 97.6 0.11 9.6 1.7 46867 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.6 123.09 75667 4005 97.24 0.19837 0.19561 0.1954 0.2512 0.2493 RANDOM 38.346
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 -0.91 0.48 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.052 r_dihedral_angle_3_deg 22.534 r_dihedral_angle_4_deg 18.877 r_dihedral_angle_1_deg 7.497 r_scangle_it 3.467 r_scbond_it 2.08 r_angle_refined_deg 1.864 r_mcangle_it 1.469 r_mcbond_it 0.834 r_symmetry_vdw_refined 0.381
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.052 r_dihedral_angle_3_deg 22.534 r_dihedral_angle_4_deg 18.877 r_dihedral_angle_1_deg 7.497 r_scangle_it 3.467 r_scbond_it 2.08 r_angle_refined_deg 1.864 r_mcangle_it 1.469 r_mcbond_it 0.834 r_symmetry_vdw_refined 0.381 r_nbtor_refined 0.319 r_nbd_refined 0.25 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.135 r_bond_refined_d 0.017 r_symmetry_hbond_refined 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16162 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling