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CRYSTAL STRUCTURE OF THE ENZYMATICALLY ACTIVE DOMAIN OF THE LISTERIA MONOCYTOGENES BACTERIOPHAGE 500 ENDOLYSIN PLY500
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M HEPES, 2.4% PEG 400, 1.7M (NH4)2SO4, PH 7.5, VAPOR DIFFUSION, HANGING DROP, 298K
Crystal Properties Matthews coefficient Solvent content 2.2 43.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.787 α = 90 b = 95.18 β = 90 c = 182.578 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2004-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 96.7 0.06 9.58 3.3 46838 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 96.7 0.24 3.66 3.66
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.8 20 44421 2392 96.3 0.198 0.196 0.2259 0.244 0.2721 RANDOM 25.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.72 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.191 r_dihedral_angle_4_deg 18.487 r_dihedral_angle_3_deg 14.556 r_dihedral_angle_1_deg 6.587 r_scangle_it 2.73 r_mcangle_it 2.211 r_scbond_it 2.058 r_mcbond_it 1.672 r_angle_refined_deg 1.628 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.191 r_dihedral_angle_4_deg 18.487 r_dihedral_angle_3_deg 14.556 r_dihedral_angle_1_deg 6.587 r_scangle_it 2.73 r_mcangle_it 2.211 r_scbond_it 2.058 r_mcbond_it 1.672 r_angle_refined_deg 1.628 r_nbtor_refined 0.31 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.207 r_symmetry_hbond_refined 0.195 r_xyhbond_nbd_refined 0.194 r_chiral_restr 0.117 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3459 Nucleic Acid Atoms Solvent Atoms 369 Heterogen Atoms 33
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling HKL2Map phasing SHARP phasing REFMAC refinement