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Crystal Structure of Human Calcium Calmodulin dependent Protein Kinase II delta isoform 1, CAMKD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V7O PDB ENTRY 2V7O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.6 M NAKPO4 HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.85 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.276 α = 90 b = 68.276 β = 90 c = 313.45 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 45 100 0.09 10.7 4.6 39106 2 58.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.53 2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2V7O 2.3 43.03 37042 1960 100 0.213 0.211 0.2138 0.248 0.2498 RANDOM 51.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 0.57 1.15 -1.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.025 r_dihedral_angle_4_deg 21.522 r_dihedral_angle_3_deg 14.525 r_dihedral_angle_1_deg 5.808 r_scangle_it 5.576 r_scbond_it 4.495 r_mcangle_it 2.481 r_mcbond_it 1.684 r_angle_refined_deg 1.425 r_angle_other_deg 0.976
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.025 r_dihedral_angle_4_deg 21.522 r_dihedral_angle_3_deg 14.525 r_dihedral_angle_1_deg 5.808 r_scangle_it 5.576 r_scbond_it 4.495 r_mcangle_it 2.481 r_mcbond_it 1.684 r_angle_refined_deg 1.425 r_angle_other_deg 0.976 r_mcbond_other 0.87 r_chiral_restr 0.08 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4721 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing