☰ Navigation Tabs
HUMAN BIR2 DOMAIN OF BACULOVIRAL INHIBITOR OF APOPTOSIS REPEAT- CONTAINING 1 (BIRC1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2UVL PDB ENTRY 2UVL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 0.1M CITRIC ACID, PH 5, 20% PEG 6000
Crystal Properties Matthews coefficient Solvent content 1.8 32.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.5 α = 90 b = 43.1 β = 90 c = 57 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2007-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 99.6 0.12 14.93 7.02 8726 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.3 0.59 3.86 7.13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2UVL 1.8 30 8131 614 99.7 0.181 0.178 0.177 0.22 0.219 RANDOM 17.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.84 -0.27 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.794 r_dihedral_angle_3_deg 16.658 r_dihedral_angle_4_deg 13.164 r_dihedral_angle_1_deg 5.244 r_scangle_it 3.66 r_scbond_it 2.365 r_mcangle_it 1.746 r_angle_refined_deg 1.324 r_mcbond_it 1.162 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.794 r_dihedral_angle_3_deg 16.658 r_dihedral_angle_4_deg 13.164 r_dihedral_angle_1_deg 5.244 r_scangle_it 3.66 r_scbond_it 2.365 r_mcangle_it 1.746 r_angle_refined_deg 1.324 r_mcbond_it 1.162 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.22 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.127 r_xyhbond_nbd_refined 0.093 r_chiral_restr 0.092 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 852 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing