☰ Navigation Tabs
Crystal structure of barley thioredoxin h isoform 2 in the oxidized state
Crystallization Crystal Properties Matthews coefficient Solvent content 1.85 33.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.256 α = 90 b = 38.37 β = 109.77 c = 56.554 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 23.6 92.3 0.15 2.9 2.5 12288
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 94.7 0.26 2.3 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 53.22 11533 603 92.5 0.19 0.186 0.1918 0.269 RANDOM 15.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.12 -1.67 1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.8 r_dihedral_angle_4_deg 30.141 r_dihedral_angle_3_deg 17.719 r_dihedral_angle_1_deg 6.47 r_scangle_it 4.134 r_scbond_it 2.65 r_angle_refined_deg 1.807 r_mcangle_it 1.572 r_mcbond_it 1.152 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.8 r_dihedral_angle_4_deg 30.141 r_dihedral_angle_3_deg 17.719 r_dihedral_angle_1_deg 6.47 r_scangle_it 4.134 r_scbond_it 2.65 r_angle_refined_deg 1.807 r_mcangle_it 1.572 r_mcbond_it 1.152 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.181 r_symmetry_hbond_refined 0.168 r_chiral_restr 0.126 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1711 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement