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The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain
Crystallization Crystal Properties Matthews coefficient Solvent content 2.7 54.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.622 α = 110.29 b = 95.523 β = 98.64 c = 122.045 γ = 93.59
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 97.5 0.097 10.7 11.8 1032287 1.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 96.1 0.56 1.75
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 112.51 83095 4402 97.5 0.222 0.219 0.281 0.3075 RANDOM 41.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 -1.28 -0.47 -0.85 -2.84 -1.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.466 r_dihedral_angle_4_deg 19.464 r_dihedral_angle_3_deg 18.58 r_dihedral_angle_1_deg 7.249 r_scangle_it 2.9 r_scbond_it 1.865 r_angle_refined_deg 1.599 r_mcangle_it 1.19 r_mcbond_it 0.716 r_symmetry_hbond_refined 0.455
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.466 r_dihedral_angle_4_deg 19.464 r_dihedral_angle_3_deg 18.58 r_dihedral_angle_1_deg 7.249 r_scangle_it 2.9 r_scbond_it 1.865 r_angle_refined_deg 1.599 r_mcangle_it 1.19 r_mcbond_it 0.716 r_symmetry_hbond_refined 0.455 r_symmetry_vdw_refined 0.442 r_nbtor_refined 0.29 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.11 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13236 Nucleic Acid Atoms Solvent Atoms 583 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement