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The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain
Crystallization Crystal Properties Matthews coefficient Solvent content 2.36 47.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.371 α = 90 b = 87.371 β = 90 c = 110.397 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 30 93.3 0.06 36.1 30.1 31111 1.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.03 99.4 0.68 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.98 28.15 27792 1486 88.1 0.208 0.204 0.2012 0.279 0.2684 RANDOM 34.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.05 0.1 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.503 r_dihedral_angle_3_deg 18.913 r_dihedral_angle_4_deg 18.36 r_dihedral_angle_1_deg 7.315 r_scangle_it 3.26 r_scbond_it 2.179 r_angle_refined_deg 1.492 r_mcangle_it 1.411 r_mcbond_it 0.855 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.503 r_dihedral_angle_3_deg 18.913 r_dihedral_angle_4_deg 18.36 r_dihedral_angle_1_deg 7.315 r_scangle_it 3.26 r_scbond_it 2.179 r_angle_refined_deg 1.492 r_mcangle_it 1.411 r_mcbond_it 0.855 r_nbtor_refined 0.307 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.197 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.114 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3341 Nucleic Acid Atoms Solvent Atoms 337 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement