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The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain
Crystallization Crystal Properties Matthews coefficient Solvent content 2.49 50.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 177.741 α = 90 b = 48.384 β = 109.97 c = 119.714 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 89.8 0.11 17.7 8.9 37484 1.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.51 90.8 0.52 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.4 112.51 35567 1877 98.5 0.2 0.196 0.1922 0.272 0.2614 RANDOM 47.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.75 -3.4 -0.57 -4.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.764 r_dihedral_angle_3_deg 19.303 r_dihedral_angle_4_deg 17.781 r_dihedral_angle_1_deg 8.332 r_scangle_it 3.067 r_scbond_it 1.968 r_angle_refined_deg 1.705 r_mcangle_it 1.266 r_mcbond_it 0.727 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.764 r_dihedral_angle_3_deg 19.303 r_dihedral_angle_4_deg 17.781 r_dihedral_angle_1_deg 8.332 r_scangle_it 3.067 r_scbond_it 1.968 r_angle_refined_deg 1.705 r_mcangle_it 1.266 r_mcbond_it 0.727 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.289 r_symmetry_hbond_refined 0.244 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.179 r_chiral_restr 0.12 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6618 Nucleic Acid Atoms Solvent Atoms 328 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement