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Structure of Deinococcus radiodurans tunicamycin resistance protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 20 DEGREESC AFTER 3-6 DAYS USING HANGING DROPS CONTAINING 2 MICROL OF THE PROTEIN, 0.4-0.8 MICROL 0.1 M CDCL2 AND 1.6-1.2 MICROL OF A RESERVOIR SOLUTION CONTAINING 11-13% PEG 4000, 0.8 M SODIUM FORMATE AND 0.1 M SODIUM ACETATE PH 5.0
Crystal Properties Matthews coefficient Solvent content 2.16 48.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.36 α = 90 b = 118.16 β = 90 c = 81.11 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH RH COATED TOROIDAL MIRROR 2006-12-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9144, 0.9792 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 22.93 99.5 0.09 14.54 4.94 28689 -3.7 19.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.97 100 0.52 3 5.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.95 22.9 27186 1486 99.4 0.176 0.174 0.1801 0.214 0.2176 RANDOM 20.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 -2.53 2.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.162 r_dihedral_angle_4_deg 18.081 r_dihedral_angle_3_deg 14.279 r_dihedral_angle_1_deg 5.319 r_scangle_it 4.821 r_scbond_it 3.206 r_mcbond_it 1.959 r_mcangle_it 1.933 r_angle_refined_deg 1.58 r_angle_other_deg 0.984
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.162 r_dihedral_angle_4_deg 18.081 r_dihedral_angle_3_deg 14.279 r_dihedral_angle_1_deg 5.319 r_scangle_it 4.821 r_scbond_it 3.206 r_mcbond_it 1.959 r_mcangle_it 1.933 r_angle_refined_deg 1.58 r_angle_other_deg 0.984 r_symmetry_vdw_other 0.287 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.21 r_nbd_other 0.207 r_symmetry_hbond_refined 0.195 r_xyhbond_nbd_refined 0.181 r_nbtor_refined 0.173 r_chiral_restr 0.1 r_nbtor_other 0.088 r_bond_refined_d 0.018 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2620 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELXD phasing