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Tailspike protein of E.coli bacteriophage HK620
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3 VAPOR DIFFUSION,HANGING DROP: PROTEIN CONCENTRATION 3MG/ML,5% PEG1500,PH3.0. RESERVOIR: 10% PEG 1500, PH 3.0. DROPLET 3 MICRO LITER: 3 MICRO LITER. CRYO CONDITION:30% PEG1500.
Crystal Properties Matthews coefficient Solvent content 2.13 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.216 α = 90 b = 74.216 β = 90 c = 175.16 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL ZERODUR MIRROR 2001-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 20 97.5 0.06 12.7 4.6 115675 14.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.43 90.2 0.26 5.1 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.38 20 108474 5722 98.8 0.151 0.15 0.1629 0.18 0.1922 RANDOM 11.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.71 0.35 0.71 -1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.59 r_dihedral_angle_4_deg 13.324 r_dihedral_angle_3_deg 10.089 r_dihedral_angle_1_deg 4.767 r_angle_refined_deg 1.499 r_angle_other_deg 0.813 r_symmetry_vdw_other 0.197 r_nbd_other 0.196 r_nbd_refined 0.191 r_nbtor_refined 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.59 r_dihedral_angle_4_deg 13.324 r_dihedral_angle_3_deg 10.089 r_dihedral_angle_1_deg 4.767 r_angle_refined_deg 1.499 r_angle_other_deg 0.813 r_symmetry_vdw_other 0.197 r_nbd_other 0.196 r_nbd_refined 0.191 r_nbtor_refined 0.18 r_symmetry_hbond_refined 0.169 r_symmetry_vdw_refined 0.146 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.089 r_nbtor_other 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4536 Nucleic Acid Atoms Solvent Atoms 935 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SOLVE phasing