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Crystal Structure of the MDM2-MDMX RING Domain Heterodimer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.8 M NH4(SO4)2, 0.5 M NACL, 0.1 M NA CITRATE, PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.216 α = 90 b = 41.784 β = 109.03 c = 76.939 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS 2007-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 25 99.9 0.08 19.1 5 73501 3.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.48 3.2 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 25.17 13993 760 100 0.209 0.208 0.2056 0.234 0.2346 RANDOM 54.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 1.86 -0.79 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.894 r_dihedral_angle_4_deg 19.701 r_dihedral_angle_3_deg 15.144 r_dihedral_angle_1_deg 7.672 r_scangle_it 2.293 r_angle_refined_deg 1.468 r_scbond_it 1.319 r_mcangle_it 0.986 r_mcbond_it 0.602 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.894 r_dihedral_angle_4_deg 19.701 r_dihedral_angle_3_deg 15.144 r_dihedral_angle_1_deg 7.672 r_scangle_it 2.293 r_angle_refined_deg 1.468 r_scbond_it 1.319 r_mcangle_it 0.986 r_mcbond_it 0.602 r_nbtor_refined 0.303 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.133 r_symmetry_vdw_refined 0.132 r_symmetry_hbond_refined 0.113 r_chiral_restr 0.098 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1960 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing