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Human Jagged-1, domains DSL and EGFs1-3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 8.5% (W/V) PEG4000, 100MM IMIDAZOLE -MALATE, PH7.0
Crystal Properties Matthews coefficient Solvent content 2.5 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61 α = 90 b = 102.3 β = 114.3 c = 62.7 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 57.1 98.6 0.09 13.1 3.7 11962 43.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.74 98.6 0.42 3.3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 2.5 48.5 11961 584 0.221 0.221 0.22 0.2331 0.239 0.2575 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 16.7 t_it 1.289 t_angle_deg 0.716 t_nbd 0.116 t_gen_planes 0.03 t_bond_d 0.007 t_trig_c_planes 0.001 t_incorr_chiral_ct t_pseud_angle t_omega_torsion
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 16.7 t_it 1.289 t_angle_deg 0.716 t_nbd 0.116 t_gen_planes 0.03 t_bond_d 0.007 t_trig_c_planes 0.001 t_incorr_chiral_ct t_pseud_angle t_omega_torsion t_other_torsion t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2299 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 9
Software Software Software Name Purpose BUSTER-TNT model building SCALA data scaling autoSHARP phasing SHARP-SOLOMON phasing DM phasing BUSTER-TNT phasing TNT refinement