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CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE IN COMPLEX with Left end 26- mer DNA and manganese
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VIH PDB ENTRY 2VIH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.2 M SODIUM FORMATE, 15-20% PEG 3350, pH 7.5
Crystal Properties Matthews coefficient Solvent content 1.93 41.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.206 α = 90 b = 50.261 β = 105.6 c = 115.625 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 IMAGE PLATE RIGAKU IMAGE PLATE MULTILAYER FOCUSING MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 94.7 0.08 12.3 2.7 17657 27.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.37 86.1 0.44 1.5 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2VIH 2.35 19.47 15419 754 89 0.203 0.203 0.1982 0.241 0.2381 RANDOM 40.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 17.55 -7.39 -0.53 -17.01
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.1 c_scbond_it 9.74 c_scangle_it 9.72 c_mcangle_it 2.96 c_angle_deg 2.3 c_mcbond_it 1.68 c_improper_angle_d 1.63 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.1 c_scbond_it 9.74 c_scangle_it 9.72 c_mcangle_it 2.96 c_angle_deg 2.3 c_mcbond_it 1.68 c_improper_angle_d 1.63 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2273 Nucleic Acid Atoms 1041 Solvent Atoms 111 Heterogen Atoms 2
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling