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Lichenase CtLic26 in complex with a thio-oligosaccharide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BV9 PDB ENTRY 2BV9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.15 M AMMONIUM SULPHATE, 30 % PEG 5K, MME, 0.1 M MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.578 α = 90 b = 62.648 β = 90 c = 79.067 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 34.88 95.8 0.09 11.8 5.1 3620
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.51 1.6 72 0.5 2 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BV9 1.51 34.88 36205 1905 97.4 0.154 0.153 0.1607 0.189 0.196 RANDOM 9.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 0.01 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.487 r_dihedral_angle_4_deg 18.465 r_dihedral_angle_3_deg 12.123 r_dihedral_angle_1_deg 6.702 r_scangle_it 3.086 r_scbond_it 2.19 r_mcangle_it 1.468 r_angle_refined_deg 1.336 r_angle_other_deg 1.143 r_mcbond_it 0.979
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.487 r_dihedral_angle_4_deg 18.465 r_dihedral_angle_3_deg 12.123 r_dihedral_angle_1_deg 6.702 r_scangle_it 3.086 r_scbond_it 2.19 r_mcangle_it 1.468 r_angle_refined_deg 1.336 r_angle_other_deg 1.143 r_mcbond_it 0.979 r_chiral_restr 0.115 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2214 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALA data scaling AMoRE phasing