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Cathsilicatein, a chimera
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MHW PDB ENTRY 1MHW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 pH 6
Crystal Properties Matthews coefficient Solvent content 2.16 42.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.826 α = 105.67 b = 58.102 β = 104.97 c = 70.209 γ = 105.05
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 63 92 0.04 14.2 1.9 108723
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.6 74 0.29 2.1 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MHW 1.5 63.25 108723 5749 91.7 0.19 0.188 0.196 0.22 0.2327 RANDOM 19.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.34 0.83 0.48 1.04 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.093 r_dihedral_angle_4_deg 12.636 r_dihedral_angle_3_deg 11.862 r_dihedral_angle_1_deg 5.194 r_scangle_it 1.684 r_scbond_it 1.222 r_angle_refined_deg 0.981 r_angle_other_deg 0.744 r_mcangle_it 0.606 r_mcbond_it 0.554
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.093 r_dihedral_angle_4_deg 12.636 r_dihedral_angle_3_deg 11.862 r_dihedral_angle_1_deg 5.194 r_scangle_it 1.684 r_scbond_it 1.222 r_angle_refined_deg 0.981 r_angle_other_deg 0.744 r_mcangle_it 0.606 r_mcbond_it 0.554 r_symmetry_vdw_refined 0.245 r_nbd_refined 0.194 r_symmetry_vdw_other 0.185 r_nbtor_refined 0.182 r_nbd_other 0.172 r_symmetry_hbond_refined 0.136 r_xyhbond_nbd_refined 0.108 r_nbtor_other 0.083 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6596 Nucleic Acid Atoms Solvent Atoms 1172 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement PHASER phasing