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P4 PROTEIN FROM BACTERIOPHAGE PHI12 S252A mutant in complex with ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.8 10% PEG 1500, 100MM NAAC PH 4.8, 5MM ADP
Crystal Properties Matthews coefficient Solvent content 2.5 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.94 α = 90 b = 128.852 β = 90 c = 158.266 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2004-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 100 0.06 28 6.8 98926 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 98 0.51 1.8 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.8 100 93889 4940 99.7 0.202 0.2 0.237 RANDOM 25.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.91 2.02 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.202 r_dihedral_angle_3_deg 12.592 r_dihedral_angle_4_deg 11.502 r_dihedral_angle_1_deg 7.929 r_scangle_it 2.15 r_scbond_it 1.504 r_angle_refined_deg 1.201 r_mcangle_it 1.125 r_mcbond_it 1.004 r_angle_other_deg 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.202 r_dihedral_angle_3_deg 12.592 r_dihedral_angle_4_deg 11.502 r_dihedral_angle_1_deg 7.929 r_scangle_it 2.15 r_scbond_it 1.504 r_angle_refined_deg 1.201 r_mcangle_it 1.125 r_mcbond_it 1.004 r_angle_other_deg 0.85 r_symmetry_vdw_other 0.268 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.203 r_nbd_other 0.202 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.129 r_symmetry_hbond_refined 0.12 r_nbtor_other 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6510 Nucleic Acid Atoms Solvent Atoms 895 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing