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Crystal Structure of the ISHp608 Transposase in Complex with Right End 31-mer DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A6O PDB ENTRY 2A6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 15-20% PEG 3350 AND 0.1 M MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.5 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.466 α = 90 b = 90.925 β = 90 c = 93.418 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH ROSENBAUM-ROCK VERTICAL FOCUSING MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 40 99.9 0.06 25 7.2 13127 67
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 100 0.56 3.5 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2A6O 2.9 40 11788 843 90.3 0.2847 0.2847 0.2785 0.3197 0.3095 RANDOM 86.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -26.228 17.764 8.465
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.9 c_scbond_it 13.01 c_scangle_it 12.74 c_mcangle_it 2.95 c_mcbond_it 1.59 c_angle_deg 1.37 c_improper_angle_d 1.22 c_bond_d 0.0055 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.9 c_scbond_it 13.01 c_scangle_it 12.74 c_mcangle_it 2.95 c_mcbond_it 1.59 c_angle_deg 1.37 c_improper_angle_d 1.22 c_bond_d 0.0055 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2073 Nucleic Acid Atoms 958 Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing