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Crystal structure of E53QbsSHMT with L-serine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 50% MPD, 0.1 M HEPES, PH 7.5, 0.2 MM EDTA, 5 MM 2-MECAPTOETHANOL, 10 MM L-SER
Crystal Properties Matthews coefficient Solvent content 2.1 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.304 α = 90 b = 106.472 β = 90 c = 57.289 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE 1.54
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT NONE 1.8 27.03 33655 1772 99.7 0.168 0.166 0.1636 0.2 0.1981 RANDOM 17.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.454 r_dihedral_angle_4_deg 16.324 r_dihedral_angle_3_deg 12.614 r_dihedral_angle_1_deg 5.475 r_scangle_it 2.92 r_scbond_it 1.912 r_angle_refined_deg 1.233 r_mcangle_it 0.994 r_mcbond_it 0.662 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.454 r_dihedral_angle_4_deg 16.324 r_dihedral_angle_3_deg 12.614 r_dihedral_angle_1_deg 5.475 r_scangle_it 2.92 r_scbond_it 1.912 r_angle_refined_deg 1.233 r_mcangle_it 0.994 r_mcbond_it 0.662 r_nbtor_refined 0.3 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.176 r_symmetry_hbond_refined 0.12 r_xyhbond_nbd_refined 0.107 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3117 Nucleic Acid Atoms Solvent Atoms 398 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement