X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.218% PEG, 10MM NA/K PHOSPHATE PH 6.2, 200MM NACL, 4MM DTT, IP6
Crystal Properties
Matthews coefficientSolvent content
2.8756.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.746α = 90
b = 121.746β = 90
c = 258.124γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRRORS2001-09-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.667.4299.390.085.05155.63666426
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.7498.440.541.163.27

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT2.666.6765198349899.20.2650.2610.339RANDOM61.09
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.010.511.01-1.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.59
r_dihedral_angle_3_deg19.523
r_dihedral_angle_4_deg18.97
r_dihedral_angle_1_deg8.025
r_scangle_it2.561
r_angle_refined_deg1.702
r_scbond_it1.659
r_mcangle_it1.248
r_mcbond_it0.686
r_symmetry_vdw_refined0.548
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.59
r_dihedral_angle_3_deg19.523
r_dihedral_angle_4_deg18.97
r_dihedral_angle_1_deg8.025
r_scangle_it2.561
r_angle_refined_deg1.702
r_scbond_it1.659
r_mcangle_it1.248
r_mcbond_it0.686
r_symmetry_vdw_refined0.548
r_symmetry_hbond_refined0.339
r_nbtor_refined0.325
r_nbd_refined0.29
r_xyhbond_nbd_refined0.199
r_chiral_restr0.088
r_bond_refined_d0.018
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13707
Nucleic Acid Atoms
Solvent Atoms12
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing