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Crystal structure of environmental isolated GH11 in complex with xylobiose and feruloyl-arabino-xylotriose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other APO FORM OF ENXYN11A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.6 3.75 MM FAX3 0.2 M AMMONIUM FORMATE, PH 6.6 AND 17% (W/V) POLYETHYLENE GLYCOL 3350
Crystal Properties Matthews coefficient Solvent content 3.2 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.47 α = 90 b = 76.47 β = 90 c = 102.6 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS 2005-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 31 99.8 0.09 20.8 6.8 27316 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.89 99.6 0.75 2 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT APO FORM OF ENXYN11A 1.8 30.66 27316 1460 99.8 0.177 0.175 0.1726 0.203 0.2002 RANDOM 18.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.377 r_dihedral_angle_4_deg 20.762 r_dihedral_angle_3_deg 11.227 r_dihedral_angle_1_deg 7.63 r_scangle_it 2.845 r_scbond_it 1.902 r_angle_refined_deg 1.431 r_mcangle_it 1.161 r_mcbond_it 0.662 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.377 r_dihedral_angle_4_deg 20.762 r_dihedral_angle_3_deg 11.227 r_dihedral_angle_1_deg 7.63 r_scangle_it 2.845 r_scbond_it 1.902 r_angle_refined_deg 1.431 r_mcangle_it 1.161 r_mcbond_it 0.662 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.277 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.132 r_symmetry_hbond_refined 0.125 r_chiral_restr 0.1 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1505 Nucleic Acid Atoms Solvent Atoms 274 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing