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High resolution structure of protoglobin from Methanosarcina acetivorans C2A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.2 0.4 M MONOBASIC AMMONIUM PHOSPHATE, pH 4.2
Crystal Properties Matthews coefficient Solvent content 2.31 46.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.059 α = 90 b = 49.271 β = 92.88 c = 51.513 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-03-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 51.4 97.8 0.05 24.7 7 48188 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 99.8 0.22 7.5 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.3 51.43 45754 2432 97.7 0.161 0.16 0.19 RANDOM 17.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.11 -0.12 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.97 r_dihedral_angle_4_deg 18.232 r_dihedral_angle_3_deg 11.647 r_dihedral_angle_1_deg 4.925 r_scangle_it 3.308 r_scbond_it 2.563 r_mcangle_it 1.801 r_angle_refined_deg 1.33 r_mcbond_it 1.27 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.97 r_dihedral_angle_4_deg 18.232 r_dihedral_angle_3_deg 11.647 r_dihedral_angle_1_deg 4.925 r_scangle_it 3.308 r_scbond_it 2.563 r_mcangle_it 1.801 r_angle_refined_deg 1.33 r_mcbond_it 1.27 r_nbtor_refined 0.317 r_xyhbond_nbd_refined 0.237 r_nbd_refined 0.231 r_symmetry_hbond_refined 0.214 r_symmetry_vdw_refined 0.209 r_chiral_restr 0.091 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1591 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing