☰ Navigation Tabs
Family 89 Glycoside Hydrolase from Clostridium perfringens in complex with PUGNAc
Crystallization Crystal Properties Matthews coefficient Solvent content 2.85 56.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.704 α = 90 b = 90.704 β = 90 c = 252.467 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113.15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.69 90.3 0.07 2.61 53561 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.2 20 50811 2688 90.3 0.211 0.208 0.208 0.251 0.2499 RANDOM 38.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.52 0.76 1.52 -2.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.341 r_dihedral_angle_4_deg 19.084 r_dihedral_angle_3_deg 16.03 r_dihedral_angle_1_deg 5.684 r_scangle_it 1.517 r_angle_refined_deg 1.125 r_scbond_it 0.962 r_mcangle_it 0.738 r_mcbond_it 0.416 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.341 r_dihedral_angle_4_deg 19.084 r_dihedral_angle_3_deg 16.03 r_dihedral_angle_1_deg 5.684 r_scangle_it 1.517 r_angle_refined_deg 1.125 r_scbond_it 0.962 r_mcangle_it 0.738 r_mcbond_it 0.416 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.201 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.08 r_symmetry_hbond_refined 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7149 Nucleic Acid Atoms Solvent Atoms 332 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement