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Family 89 glycoside hydrolase from Clostridium perfringens in complex with beta-N-acetyl-D-glucosamine
Crystallization Crystal Properties Matthews coefficient Solvent content 2.64 53.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.773 α = 90 b = 90.773 β = 90 c = 252.779 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113.15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 29.71 99.1 0.08 4 72843 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.05 20 69107 3668 99.1 0.192 0.19 0.1807 0.23 0.2302 RANDOM 30.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 0.54 1.07 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.393 r_dihedral_angle_4_deg 18.41 r_dihedral_angle_3_deg 14.758 r_dihedral_angle_1_deg 8.516 r_scangle_it 1.613 r_angle_refined_deg 1.321 r_scbond_it 0.981 r_mcangle_it 0.682 r_mcbond_it 0.359 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.393 r_dihedral_angle_4_deg 18.41 r_dihedral_angle_3_deg 14.758 r_dihedral_angle_1_deg 8.516 r_scangle_it 1.613 r_angle_refined_deg 1.321 r_scbond_it 0.981 r_mcangle_it 0.682 r_mcbond_it 0.359 r_nbtor_refined 0.302 r_nbd_refined 0.187 r_symmetry_vdw_refined 0.184 r_xyhbond_nbd_refined 0.139 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.122 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7176 Nucleic Acid Atoms Solvent Atoms 887 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement