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STRUCTURE OF STRICTOSIDINE SYNTHASE IN COMPLEX WITH INHIBITOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FP8 PDB ENTRY 2FP8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.1 MM INHIBITOR, 0.8 M POTASSIUM SODIUM TARTRATE TETRAHYDRATE AND 0.1 M HEPES, PH 7.3
Crystal Properties Matthews coefficient Solvent content 3.76 67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.993 α = 90 b = 149.993 β = 90 c = 121.688 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 20 100 0.1 18.1 5.9 20319 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.05 100 0.52 3.6 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2FP8 3.01 20 19218 1032 99.8 0.189 0.186 0.1843 0.247 0.2471 RANDOM 48.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.06 3.03 6.06 -9.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.392 r_dihedral_angle_3_deg 20.031 r_dihedral_angle_4_deg 19.38 r_dihedral_angle_1_deg 7.686 r_scangle_it 5.174 r_scbond_it 3.303 r_angle_refined_deg 1.921 r_mcangle_it 1.274 r_mcbond_it 0.664 r_nbtor_refined 0.335
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.392 r_dihedral_angle_3_deg 20.031 r_dihedral_angle_4_deg 19.38 r_dihedral_angle_1_deg 7.686 r_scangle_it 5.174 r_scbond_it 3.303 r_angle_refined_deg 1.921 r_mcangle_it 1.274 r_mcbond_it 0.664 r_nbtor_refined 0.335 r_symmetry_vdw_refined 0.301 r_nbd_refined 0.247 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.121 r_symmetry_hbond_refined 0.034 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4803 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing