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Rim domain of main porin from Mycobacteria smegmatis
Crystallization Crystal Properties Matthews coefficient Solvent content 3.2 61.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.377 α = 90 b = 105.652 β = 109.26 c = 102.963 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 65.79 82.6 0.06 10.18 2.17 36299 4.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.69 87.1 0.21 4.1 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.59 65.79 35210 1089 100 0.274 0.273 0.2752 0.299 0.3039 RANDOM 50.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.98 0.59 0.86 1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.462 r_dihedral_angle_4_deg 22.65 r_dihedral_angle_3_deg 17.735 r_dihedral_angle_1_deg 8.447 r_scangle_it 2.285 r_angle_refined_deg 1.576 r_scbond_it 1.478 r_mcangle_it 1.271 r_mcbond_it 0.812 r_symmetry_hbond_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.462 r_dihedral_angle_4_deg 22.65 r_dihedral_angle_3_deg 17.735 r_dihedral_angle_1_deg 8.447 r_scangle_it 2.285 r_angle_refined_deg 1.576 r_scbond_it 1.478 r_mcangle_it 1.271 r_mcbond_it 0.812 r_symmetry_hbond_refined 0.321 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.282 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.112 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7912 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing