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Second LRR domain of human Slit2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 20-24% PEG 4000, 20% ISOPROPANOL, 0.1M NA CITRATE, PH=5.6
Crystal Properties Matthews coefficient Solvent content 2.4 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.36 α = 90 b = 123.45 β = 90 c = 127.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TORODIAL MIRROR 2006-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 94.3 0.12 10.2 5.9 61528
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 87.1 0.36 4.6 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 30 60317 3221 97.6 0.216 0.213 0.2175 0.261 0.264 RANDOM 11.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.1 2.95 -1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.464 r_dihedral_angle_4_deg 17.235 r_dihedral_angle_3_deg 16.156 r_dihedral_angle_1_deg 6.25 r_scangle_it 3.501 r_scbond_it 2.213 r_angle_refined_deg 1.662 r_mcangle_it 1.202 r_mcbond_it 0.777 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.464 r_dihedral_angle_4_deg 17.235 r_dihedral_angle_3_deg 16.156 r_dihedral_angle_1_deg 6.25 r_scangle_it 3.501 r_scbond_it 2.213 r_angle_refined_deg 1.662 r_mcangle_it 1.202 r_mcbond_it 0.777 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.293 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.182 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.114 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6525 Nucleic Acid Atoms Solvent Atoms 536 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing