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L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- E192A)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OJR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 40% (V/V) 1,2-PROPANEDIOL, 0.1 M ACETATE (PH4.5), pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.7 54.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.059 α = 90 b = 107.059 β = 90 c = 57.161 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.23 20 99.4 0.06 20 8.81 96326
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.23 100 0.36 6.15 8.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1OJR 1.23 10 89467 6734 92.6 0.0906 0.0904 0.0948 0.1221 0.1205 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 39 2152.5 2712.73
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.11 s_zero_chiral_vol 0.094 s_non_zero_chiral_vol 0.091 s_anti_bump_dis_restr 0.068 s_similar_adp_cmpnt 0.051 s_angle_d 0.035 s_from_restr_planes 0.0281 s_bond_d 0.015 s_rigid_bond_adp_cmpnt 0.005 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2121 Nucleic Acid Atoms Solvent Atoms 564 Heterogen Atoms 62
Software Software Software Name Purpose SHELXL-97 refinement XDS data reduction XSCALE data scaling EPMR phasing