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Crystal structure of P. abyssi RPS24
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.2 100MM NA ACETATE 40% PEG 400 185MM MGCL2, pH 4.2
Crystal Properties Matthews coefficient Solvent content 3.04 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.81 α = 90 b = 85.63 β = 90 c = 42.11 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 97.5 0.06 15.3 5.3 13468 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.02 91.3 0.31 4.8 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.9 27.39 18584 1001 99.4 0.224 0.221 0.2423 0.266 0.2778 RANDOM 29.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.19 -1.46 4.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.137 r_dihedral_angle_4_deg 13.87 r_dihedral_angle_3_deg 13.023 r_dihedral_angle_1_deg 5.505 r_scangle_it 3.674 r_scbond_it 2.907 r_angle_refined_deg 1.722 r_mcangle_it 1.523 r_mcbond_it 1.397 r_angle_other_deg 0.904
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.137 r_dihedral_angle_4_deg 13.87 r_dihedral_angle_3_deg 13.023 r_dihedral_angle_1_deg 5.505 r_scangle_it 3.674 r_scbond_it 2.907 r_angle_refined_deg 1.722 r_mcangle_it 1.523 r_mcbond_it 1.397 r_angle_other_deg 0.904 r_symmetry_vdw_other 0.307 r_symmetry_hbond_refined 0.27 r_symmetry_vdw_refined 0.242 r_nbd_refined 0.22 r_nbd_other 0.208 r_nbtor_refined 0.194 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.094 r_nbtor_other 0.089 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1600 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing