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Structure of a Family 2 Pectate Lyase in a Native Form
Crystallization Crystal Properties Matthews coefficient Solvent content 2.44 57.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.486 α = 90 b = 95.642 β = 90 c = 126.608 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 19.59 97.4 0.05 3.6 105592 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 1.5 19.59 105592 5574 97.4 0.223 0.222 0.381 0.243 0.3854 RANDOM 20.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.637 r_dihedral_angle_4_deg 16.087 r_dihedral_angle_3_deg 12.453 r_dihedral_angle_1_deg 4.925 r_scangle_it 2.674 r_scbond_it 1.706 r_angle_refined_deg 1.144 r_mcangle_it 1.08 r_mcbond_it 0.69 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.637 r_dihedral_angle_4_deg 16.087 r_dihedral_angle_3_deg 12.453 r_dihedral_angle_1_deg 4.925 r_scangle_it 2.674 r_scbond_it 1.706 r_angle_refined_deg 1.144 r_mcangle_it 1.08 r_mcbond_it 0.69 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.276 r_nbd_refined 0.198 r_symmetry_hbond_refined 0.149 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4324 Nucleic Acid Atoms Solvent Atoms 759 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement